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- Genetic diversity in the portuguese Mertolenga cattle breed assessed by pedigree analysisPublication . Carolino, Nuno; Vitorino, Andreia; Carolino, Inês; Pais, J.; Henriques, N.; Silveira, M.; Vicente, AntónioThe Mertolenga beef cattle, currently with 27,000 breeding females in Portugal, is the largest Portuguese native breed, despite some variation in the breeding stock over the last years. The purpose of this study was to estimate parameters related to the population structure and genetic diversity and to investigate the major factors affecting genetic erosion in the breed, based on the pedigree herdbook information collected since the 1950s, including records on 221,567 animals from 425 herds. The mean generation intervals were 6.4 years for sires and 7.1 years for dams, respectively. The rate of inbreeding per year was 0.183% ± 0.020% and the correspondent effective population size was 38.83. In the reference population (35,017 calves born between 2015 and 2019), the average inbreeding and relatedness were 8.82% ± 10% and 2.05% ± 1.26%, respectively. The mean relationship among animals from the same and from different herds was 29.25% ± 9.36% and 1.87% ± 1.53%, respectively. The estimates for the effective number of founders, ancestors, founding herds and herds supplying sires were 87.9, 59.4, 21.4 and 73.5, respectively. Although the situation of the Mertolenga breed is not alarming, these results indicate the need to adopt measures to maintain the genetic variability of the population
- On the origins of American Criollo pigs: A common genetic background with a lasting Iberian signaturePublication . Revidatti, M. A.; Gama, L.L.T.; Martin Burriel, I.; Cortés Gardyn, O.; Cappello Villada, J. S.; Carolino, Inês; Javier Cañón, F.; Ginja, C.; Sponenberg, P.; Vicente, António; Zaragoza, P.; Vicente Delgado, J.; Martinez, A.American Criollo pigs are thought to descend mainly from those imported from the Iberian Peninsula starting in the late 15th century. Criollo pigs subsequently expanded throughout the Americas, adapting to very diverse environments, and possibly receiving influences from other origins. With the intensification of agriculture in the mid-20th century, cosmopolitan breeds largely replaced Criollo pigs, and the few remaining are mostly maintained by rural communities in marginal areas where they still play an important socio-economic and cultural role. In this study, we used 24 microsatellite markers in samples from 1715 pigs representing 46 breeds with worldwide distribution, including 17 American Criollo breeds, with the major focus of investigating their genetic diversity, structure and breed relationships. We also included representatives of the Iberian, Local British, Hungarian, Chinese and Commercial breeds, as well as Wild Boar, in order to investigate their possible influence in the genetic composition of Criollos. Our results show that, when compared with the other breeds, Criollo pigs present higher levels of genetic diversity, both in terms of allelic diversity and expected heterozygosity. The various analyses indicate that breed differentiation overall explains nearly 21% of the total genetic diversity. Criollo breeds showed their own identity and shared a common genetic background, tending to cluster together in various analyses, even though they differ from each other. A close relationship of Criollos with Iberian breeds was revealed by all the different analyses, and the contribution of Iberian breeds, particularly of the Celtic breeds, is still present in various Criollo breeds. No influence of Chinese breeds was detected on Criollos, but a few were influenced by Commercial breeds or by wild pigs. Our results confirm the uniqueness of American Criollo pigs and the role that Iberian breeds have played in their development.
- Raça Puro-Sangue Lusitano: caracterização genética por análise demográfica - 2022Publication . Vicente, António; Carolino, Nuno; Vitorino, Andreia; Carolino, Inês; Ralão, J.; Mateus, M.; Silveira, M.
- Raça Puro-Sangue Lusitano – Caracterização Genética por Análise Demográfica 2020Publication . Vicente, António; Carolino, Nuno; Carolino, Inês; Ralão, J.; Silveira, M.
- Raça suína Malhado de Alcobaça: caracterização genética por análise demográfica - 2022Publication . Vicente, António; Carolino, Nuno; Vitorino, Andreia; Carolino, Inês; Bastos, J.; Silveira, M.
- Genetic evaluation for productive traits in endangered Portuguese Malhado de Alcobaça pigPublication . Vicente, A.; Bastos, J.; Silveira, M.; Carolino, I.; Carolino, N.Malhado de Alcobaça (MA) is a swine breed from center west Portugal, recognized in 2003. Herdbook (LGMA) has information of >17,000 animals (1985-2022). It´s a very endangered breed with only 244 sows, 18 boars and 12 breeders. Within the scope of MA’s genetic conservation plan, for genetic evaluation, genetic parameters and fixed effects were estimated for birth weight (PN), for adjusted weight at 30 d (P30) and at 90 d (P90). Pedigree records (n=16,883) and weighing records (nPN=9,198; nP30=5,799; nP90=2,429) from LGMA of 362 litters were compiled. Genetic parameters and fixed effects, genetic values and precisions were predicted for PN, P30 and P90, through BLUP, with a mixed model including fixed effects of breeder × year of birth, season of birth, sex, age of mother (linear / quadratic effect) and as random effects genetic value of animal, maternal genetic effect and permanent environmental effect of litter. Fixed effects of prolificacy and number of weaned piglets were included as covariates, respectively, in PN and P30/P90 analyses. Mean values for PN 1.32±0.28 kg, 7.16±1.6 kg P30 and 34.1±6.4 kg P90 were recorded. For PN, P30 and P90, respectively, a heritability for direct effects of 0.170±0.156, 0.145±0.161 and 0.293±0.175; a maternal heritability of 0.084±0.109, 0.124±0.173 and 0.250±0.186 and a genetic correlation between direct and maternal effects of -0.344, -0.524 and -0.174 was estimated. Permanent environmental effect of litter was 0.395±0.056 PN, 0.403±0.086 P30 and 0.129±0.047 P90. In fixed effects, a superiority was observed for males of +0.031 kg PN, +0.046 kg P30 and +0.201 P90. Breeder × year effect showed maximum differences of 0.93, 5.21 and 19.25 kg for PN, P30 and P90, respectively, with Spring being the best season of birth. Sow age at farrowing had a quadratic effect for all traits. For each increase of 1 piglet in prolificacy, PN, P30 and P90 were reduced by 4, 7 and 58 g, respectively.
- Avaliação genómica nas espécies pecuáriasPublication . Carolino, Nuno; Silva, F.S.; Sousa, C.O.; Jacob, P.; Bacalhau, N.; Vitorino, Andreia; Vicente, António; Carolino, Inês